COMA
Detection of Distant Evolutionary Relationships
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Input
Paste protein sequence or multiple alignment
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Input type
Fasta
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Job description (max 20 characters)
Construction of query-based multiple alignment using PSI-BLAST
Do not run PSI-BLAST (use my input multiple alignment)
Let the server handle PSI-BLAST run
Configure PSI-BLAST run:
Select database
uniclust50_2018-10-10
uniclust30_2018-10-10
uniclust90_2018-10-10
PSI-BLAST filters
No filtering
Low complexity
Mask for lookup table only
E-value threshold for inclusion
Maximal number of iterations
Compositional adjustments (4 choices)
No adjustment (0)
Composition-based statistics (1)
Conditional compositional score matrix adjustment (2)
Universal compositional score matrix adjustment (3)
Profile search and output options
Select profile database
pdb40_2016-05-23
scop40_2.06_2016-05-23
pfam30.0_2016-05-23
E-value threashold
Maximal number of hits to show
Maximal number of alignments to show
Advanced options
