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Paste protein sequence or multiple alignment
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Construction of query-based multiple alignment using PSI-BLAST

Do not run PSI-BLAST (use my input multiple alignment)
Let the server handle PSI-BLAST run
Configure PSI-BLAST run:
Select database
PSI-BLAST filters
E-value threshold for inclusion
Maximal number of iterations
Compositional adjustments (4 choices)

Profile search and output options

Select profile database
E-value threashold
Maximal number of hits to show
Maximal number of alignments to show
Advanced options